This behavior occurs because of the configuration changes that the ISA Server 2004 Setup program makes to Windows. The ISA Server Setup program modifies the following registry subkey to set the value of the SynAttackProtect registry entry to 2:
HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\TcpIp\Parameters
To take effect, this registry change requires that you restart the computer. However, if you subsequently remove ISA Server 2004, the Setup program does not remove this registry entry. Therefore, when you later reinstall ISA Server 2004, you are not prompted to restart the computer.