When an email is encrypted, it creates a token which is sent to the recipient of that email.
This 1 to 1 relationship makes is possible for a user to send an email to another user and be encrypted.
What happens when an encrypted email is sent is:
As Dynamics is a third party application, when it tries to access the email it will only get this email in an encrypted state.
As the token won’t exist in Dynamics 365, the email will not be decrypted.
• A unique cipher encrypts an email message.
• The email is encoded into ciphertext.
• Email is sent and received.
• Receiver enters a cipher key to decode the message.
PEC and RFC6109 do not use APIs via REST or SOAP, as such Server Side Synchronization and Email Router does not Support this email type for synchronization.
In order to have this email synchronized with you Dynamics 365 Organization, you will have to remove the encryption from the email, this can be achieved by forwarding the email.